Table of Contents

HappyDoc Generated Documentation  
Modules and Packages   

Accelerators

HappyDoc Generated Documentation: Accelerators

AddH

Add hydrogens to structures

AlignPlot

HappyDoc Generated Documentation: AlignPlot

Benchmark

HappyDoc Generated Documentation: Benchmark

CGLtk

Generically useful CGL Tk additions

CGLutil

Generically useful modules

Categorizer

Categorize atoms into solvent, ligand, etc. categories

ChemGroup

Find chemical groups in a structure

Collaboratory

Initialization code for the Collaboratory Chimera Extension

CollaboratoryCORBA

HappyDoc Generated Documentation: CollaboratoryCORBA

DOCKGridViewer

HappyDoc Generated Documentation: DOCKGridViewer

DelphiViewer

View Delphi output in Chimera

EnsembleMatch

HappyDoc Generated Documentation: EnsembleMatch

FindHBond

Find hydrogen bonds

Idle

HappyDoc Generated Documentation: Idle

MSFViewer

HappyDoc Generated Documentation: MSFViewer

MainChain

HappyDoc Generated Documentation: MainChain

Midas

Emulate UCSF Midas command set

MinrmsPlot

HappyDoc Generated Documentation: MinrmsPlot

ModelBrowser

HappyDoc Generated Documentation: ModelBrowser

ModelPanel

GUI to perform functions on models

Movie

HappyDoc Generated Documentation: Movie

MultAlignViewer

HappyDoc Generated Documentation: MultAlignViewer

NeedlemanWunsch

HappyDoc Generated Documentation: NeedlemanWunsch

OpenSave

Standard open/save panels for Chimera

PBReader

Show pseudobonds described in a file

Phantom

HappyDoc Generated Documentation: Phantom

PipesAndPlanks

HappyDoc Generated Documentation: PipesAndPlanks

PythonModel

Access Chimera OpenGL drawing

ResProp

Color residues by property (e.g. aliphatic)

RibbonStyleEditor

HappyDoc Generated Documentation: RibbonStyleEditor

ScaleBar

HappyDoc Generated Documentation: ScaleBar

SessionUtil

HappyDoc Generated Documentation: SessionUtil

SimpleSession

Save/restore most aspects of a Chimera modeling session

SmithWaterman

HappyDoc Generated Documentation: SmithWaterman

StructMeasure

Interface to structure measurements (e.g. distances, angles)

Surfnet

HappyDoc Generated Documentation: Surfnet

SwapRes

Change residue side chains

Texturer

Convenience classes for making small 2D textures

Trajectory

HappyDoc Generated Documentation: Trajectory

ViewDock

HappyDoc Generated Documentation: ViewDock

VolumeData

HappyDoc Generated Documentation: VolumeData

VolumePath

HappyDoc Generated Documentation: VolumePath

VolumeViewer

HappyDoc Generated Documentation: VolumeViewer

_chimera

Declarations of basic Chimera classes (Molecule, Atom, etc.)

_contour

_contour module

_cubes

_cubes module

_dockgrid

_dockgrid module

_surface

_surface module

_surfnet

_surfnet module

_volume

_volume module

blast

HappyDoc Generated Documentation: blast

chimera

Chimera module

mpose

HappyDoc Generated Documentation: mpose

registration

HappyDoc Generated Documentation: registration

VolumeProcessing/

apply

combine

downsize

gaussian

ridges

showheader

subregion

tonetcdf

omni/

CosNaming

HappyDoc Generated Documentation: CosNaming

CosNaming__POA

HappyDoc Generated Documentation: CosNaming__POA

Naming_idl

omniORB

HappyDoc Generated Documentation: omniORB


Table of Contents

This document was automatically generated on Wed Mar 26 19:01:59 2003 by HappyDoc version 2.1