select_marker ( self,  marker )

Select new marker and deselect other markers.

mark_first_maximum (
        self,
        slice,
        marker_set,
        )

show_chosen_markers ( self,  show )

save_marker_set_cb ( self )

open_marker_set ( self,  path )

update_mouse_binding_cb ( self )

delete_links_cb ( self )

show_chosen_links ( self,  show )

get_file_path (
        self,
        mslist,
        ask_path,
        )

remove_empty_marker_sets ( self,  mset_name )

mouse_mode_icon ( self )

all_current_links ( self )

close_session_cb (
        self,
        trigger,
        a1,
        a2,
        )

show_panels ( self,  pnames )

find_marker_set_by_name ( self,  name )

selected_markers ( self )

unselect_all_markers ( self )

mark_point (
        self,
        xyz,
        marker_set,
        )

Xyz position must be in Chimera world coordinates.

all_current_markers ( self )

add_marker (
        self,
        pointer_x,
        pointer_y,
        place_markers_on_data,
        place_markers_on_space,
        )

shown_panels ( self )

move_marker_3d ( self,  xyz )

Used with 3D input devices.

delete_marker_notes_cb ( self )

selected_links ( self )

rename_active_marker_set ( self,  name )

ask_for_save_path (
        self,
        title,
        default_path,
        )

Close ( self )

new_marker_set ( self,  name )

save_selected_marker_sets_cb ( self )

fillInUI ( self,  parent )

add_marker_3d ( self,  xyz )

Used with 3D input devices.

The user interface option to turn on and off marker placement and motion apply are intended only to restrict mouse input. So they are not checked here.

remove_marker_sets ( self,  marker_sets )

set_active_marker_set ( self,  marker_set )

move_marker (
        self,
        pointer_x,
        pointer_y,
        shift,
        )

select_marker_3d ( self,  xyz )

map ( self,  event )

open_marker_set_cb ( self )

visible_data_above_threshold (
        self,
        data_region,
        xyz,
        )

mouse_up_cb (
        self,
        viewer,
        event,
        )

mark_data (
        self,
        xyz,
        marker_set,
        )

Place marker if data value is above detection threshold.

Xyz position must be in Chimera world coordinates.

save_marker_set_as_cb ( self )

grab_marker_3d ( self,  xyz )

data_region ( self )

volume_segment (
        self,
        data_region,
        pointer_x,
        pointer_y,
        )

save_session_cb (
        self,
        trigger,
        x,
        file,
        )

grab_marker (
        self,
        pointer_x,
        pointer_y,
        )

mouse_drag_cb (
        self,
        viewer,
        event,
        )

drop_and_link_marker (
        self,
        xyz,
        rgba,
        marker_radius,
        link_radius,
        marker_set,
        )

Xyz position must be in marker set coordinates.

delete_markers_cb ( self )

close_marker_set_cb ( self )

chosen_markers ( self )

If no markers selected return all markers of active marker set.

mark_slice_midpoint (
        self,
        slice,
        marker_set,
        )

new_marker_set_cb ( self )

consecutive_selection_cb ( self )

This code relies on markers being implemented as atoms.

unmap ( self,  event )

show_default_panels_cb ( self )

open_file_dialog_cb (
        self,
        apply,
        dialog,
        )

mark_clip_planes_midpoint (
        self,
        pointer_x,
        pointer_y,
        marker_set,
        )

message ( self,  string )

save_marker_sets (
        self,
        mslist,
        path=None,
        ask_path=True,
        )

Save marker sets in one file.

mouse_down_cb (
        self,
        viewer,
        event,
        )

show_marker_notes ( self,  show )

ungrab_marker ( self )

add_marker_set (
        self,
        marker_set,
        remove_empty_duplicate_sets=True,
        )

update_marker_set_listbox ( self )

form_link_cb (
        self,
        trigger,
        user_data,
        selection,
        )

Link consecutively selected_markers.

selected_marker_sets ( self )

If no list box line is selected, include the active marker set.

transfer_markers_cb ( self )

Transfer selected markers to current marker set.

save_all_marker_sets_cb ( self )

data_slice (
        self,
        pointer_x,
        pointer_y,
        )

create_link (
        self,
        m1,
        m2,
        rgba,
        radius,
        )

chosen_links ( self )