Table of Contents

Class: Atom _chimera/__init__.py

Atom documentation

constants:

  • Ball = 3

  • Dot = 0

  • EndCap = 2

  • Sphere = 1

attributes:

  • altLoc

  • bonds

  • color

  • defaultRadius

  • display

  • drawMode

  • element

  • hide

  • idatmType

  • label

  • labelColor

  • molecule

  • name

  • pseudoBonds

  • radius

  • residue

  • surfaceCategory

  • surfaceColor

  • surfaceDisplay

  • vdw

  • vdwColor

Methods   
__hash__
addBond
addPseudoBond
allRings
associated
associations
clearVdwPoints
connectsTo
coord
coordIndex
coordination
findBond
findPseudoBond
minimumRings
oslChildren
oslIdent
oslLevel
oslParents
oslTestAbbr
removeBond
removePseudoBond
revertDefaultRadius
rootAtom
setCoord
shown
traverseFrom
xformCoord
  __hash__ 
__hash__ ( self )

arguments/return value unknown

hash instance

  addBond 
addBond ( self,  element )

addBond(Bond* element)

addBond documentation.

  addPseudoBond 
addPseudoBond ( self,  element )

addPseudoBond(PseudoBond* element)

addPseudoBond documentation.

  allRings 
allRings (
        self,
        crossResidues,
        sizeThreshold,
        )

allRings(bool crossResidues, int sizeThreshold) -> std::vector<Ring>

allRings documentation.

  associated 
associated (
        self,
        otherAtom,
        category,
        )

associated(Atom* otherAtom, otf::Symbol category) -> bool

associated documentation.

  associations 
associations (
        self,
        category,
        otherAtom,
        )

associations(otf::Symbol category, Atom* otherAtom) -> std::vector<PseudoBond*>

associations documentation.

  clearVdwPoints 
clearVdwPoints ( self )

clearVdwPoints()

clearVdwPoints documentation.

  connectsTo 
connectsTo ( self,  a )

connectsTo(Atom* a) -> Bond*

connectsTo documentation.

  coord 
coord ( self )

coord() -> Coord coord(CoordSet* cs) -> Coord

coord documentation.

  coordIndex 
coordIndex ( self )

coordIndex() -> int

coordIndex documentation.

  coordination 
coordination ( self,  valueIfUndefined )

coordination(int valueIfUndefined) -> int

coordination documentation.

  findBond 
findBond ( self,  ap )

findBond(Atom* ap) -> Bond*

findBond documentation.

  findPseudoBond 
findPseudoBond ( self,  index )

findPseudoBond(int index) -> PseudoBond*

findPseudoBond documentation.

  minimumRings 
minimumRings ( self,  crossResidues )

minimumRings(bool crossResidues) -> std::vector<Ring>

minimumRings documentation.

  oslChildren 
oslChildren ( self )

oslChildren() -> std::vector<Selectable*>

oslChildren documentation.

  oslIdent 
oslIdent (
        self,
        start,
        end,
        )

oslIdent(enum Selector start, enum Selector end) -> std::string

oslIdent documentation.

  oslLevel 
oslLevel ( self )

oslLevel() -> enum Selector

oslLevel documentation.

  oslParents 
oslParents ( self )

oslParents() -> std::vector<Selectable*>

oslParents documentation.

  oslTestAbbr 
oslTestAbbr ( self,  a )

oslTestAbbr(OSLAbbreviation* a) -> bool

oslTestAbbr documentation.

  removeBond 
removeBond ( self,  element )

removeBond(Bond* element)

removeBond documentation.

  removePseudoBond 
removePseudoBond ( self,  element )

removePseudoBond(PseudoBond* element)

removePseudoBond documentation.

  revertDefaultRadius 
revertDefaultRadius ( self )

revertDefaultRadius()

revertDefaultRadius documentation.

  rootAtom 
rootAtom ( self,  ignoreBreakPoints )

rootAtom(bool ignoreBreakPoints) -> Atom*

rootAtom documentation.

  setCoord 
setCoord ( self,  c )

setCoord(Coord c) setCoord(Coord c, CoordSet* cs)

setCoord documentation.

  shown 
shown ( self )

shown() -> bool

shown documentation.

  traverseFrom 
traverseFrom ( self,  ignoreBreakPoints )

traverseFrom(bool ignoreBreakPoints) -> Atom*

traverseFrom documentation.

  xformCoord 
xformCoord ( self )

xformCoord() -> Coord xformCoord(CoordSet* cs) -> Coord

xformCoord documentation.


Table of Contents

This document was automatically generated on Wed Mar 26 19:02:47 2003 by HappyDoc version 2.1