Table of Contents

Class: BaseViewer MSFViewer/BaseViewer.py

Viewer is a Frame for displaying an MSF instance

Base Classes   
Frame
Methods   
__init__
calcSim
calcSimRes
colorSchemeCB
editDelete
editInsert
fileClose
fileInspect
filePrint
fileSave
findEditedRegion
fontCB
inpectorInfo
inspectorCB
makeNameMenu
newpdb
oldpdb
patternCB
patternInfo
pdbDisassociate
pdbFile
pdbNewAssociate
pdbOldAssociate
pdbResidue
prepareNameMenu
progressEnd
progressInit
progressShow
regionCB
setFont
setSimColour
simColour
startSimDialog
styleBackgroundChange
styleColorsChoose
styleColorsEdit
styleColorsLoad
styleColorsSave
styleFontChange
unpdb
xview
yview
  __init__ 
__init__ (
        self,
        msf,
        master=None,
        seqCount=10,
        nameWidth=10,
        seqWidth=80,
        **kw,
        )

  calcSim 
calcSim ( self,  percent )

  calcSimRes 
calcSimRes (
        self,
        residues,
        percent,
        )

  colorSchemeCB 
colorSchemeCB (
        self,
        scheme,
        reason,
        *args,
        )

Callback for ColorScheme

  editDelete 
editDelete ( self )

Sequence editing functions

  editInsert 
editInsert ( self,  char )

  fileClose 
fileClose ( self )

  fileInspect 
fileInspect ( self )

File menu callback routines

  filePrint 
filePrint ( self )

  fileSave 
fileSave ( self )

  findEditedRegion 
findEditedRegion (
        self,
        width,
        area,
        regionList,
        )

  fontCB 
fontCB (
        self,
        chooser,
        reason,
        *args,
        )

Callback for FontChooser

  inpectorInfo 
inpectorInfo (
        self,
        inspector,
        request,
        *args,
        )

  inspectorCB 
inspectorCB (
        self,
        inspector,
        reason,
        *args,
        )

Callback and information for Inspector

  makeNameMenu 
makeNameMenu ( self )

Create menu for individual sequence options Override to add more entries

  newpdb 
newpdb ( self )

Sequence pop-up menu callback routines

  oldpdb 
oldpdb ( self )

  patternCB 
patternCB (
        self,
        pattern,
        reason,
        *args,
        )

Callback for PatternBrowser

  patternInfo 
patternInfo (
        self,
        pattern,
        request,
        *args,
        )

  pdbDisassociate 
pdbDisassociate ( self,  n )

  pdbFile 
pdbFile ( self,  n )

Return file name associated with sequence n

  pdbNewAssociate 
pdbNewAssociate ( self,  n )

Routines for (dis)associating PDB file with sequence Override for specific modeling package

  pdbOldAssociate 
pdbOldAssociate ( self,  n )

  pdbResidue 
pdbResidue (
        self,
        n,
        r,
        )

Return name associated with residue r of sequence n

  prepareNameMenu 
prepareNameMenu ( self,  n )

  progressEnd 
progressEnd ( self )

  progressInit 
progressInit ( self )

Progress message display routines Override to provide alternative display

  progressShow 
progressShow ( self,  msg )

Exceptions   
ViewerAbort, 'cancelled at user request'
  regionCB 
regionCB (
        self,
        region,
        reason,
        *args,
        )

Callback for RegionBrowser

  setFont 
setFont ( self )

  setSimColour 
setSimColour ( self,  fract=0.8 )

  simColour 
simColour ( self,  simMatrix )

  startSimDialog 
startSimDialog ( self )

  styleBackgroundChange 
styleBackgroundChange ( self )

  styleColorsChoose 
styleColorsChoose ( self,  color )

Tries to load the color map indicated by color

  styleColorsEdit 
styleColorsEdit ( self )

Style menu callback routines

  styleColorsLoad 
styleColorsLoad ( self )

  styleColorsSave 
styleColorsSave ( self )

  styleFontChange 
styleFontChange ( self )

  unpdb 
unpdb ( self )

  xview 
xview ( self,  *args )

  yview 
yview ( self,  *args )

Synchronize vertical scrolling of canvases


Table of Contents

This document was automatically generated on Wed Mar 26 19:02:19 2003 by HappyDoc version 2.1