Table of Contents

Module: standard_accelerators Accelerators/standard_accelerators.py

Imported modules   
import chimera
Functions   
activate_midas_emulator
active_marker_set
backbone_only
ball_and_stick_representation
clear_selection
close_all_models
color_by_element
display_atoms
edged_ribbon
flat_ribbon
hide_all_markers
hide_atoms
hide_midas_emulator
hide_ribbon
hide_volume
quit
register_accelerators
remove_volume
round_ribbon
show_accelerator_dialog
show_all_markers
show_blue_markers
show_chain_trace_only
show_cyan_markers
show_green_markers
show_model_panel
show_mouse_modes
show_open_file_dialog
show_open_volume_dialog
show_phantom_dialog
show_preferences_dialog
show_python_shell
show_red_markers
show_reply_log
show_side_chains_only
show_side_view
show_users_guide
show_volume
show_volume_dialog
show_volume_markers
show_volume_path_tracer_dialog
sphere_representation
standard_orientation
stick_representation
toggle_blue_markers
toggle_cyan_markers
toggle_green_markers
toggle_red_markers
toggle_status_line
toggle_volume_markers
turn_off_accelerators
view_all
wire_representation
  activate_midas_emulator 
activate_midas_emulator ()

Turn on Midas emulator and turn off accelerators

  active_marker_set 
active_marker_set ()

  backbone_only 
backbone_only ()

Display backbone only

  ball_and_stick_representation 
ball_and_stick_representation ()

Show molecules with ball and stick representation

  clear_selection 
clear_selection ()

Clear selection

  close_all_models 
close_all_models ()

Close all models

  color_by_element 
color_by_element ()

Color atoms by element

  display_atoms 
display_atoms ()

Display atoms

  edged_ribbon 
edged_ribbon ()

Show molecules with edged ribbon representation

  flat_ribbon 
flat_ribbon ()

Show molecules with flat ribbon representation

  hide_all_markers 
hide_all_markers ()

Hide all volume markers from the active marker set

  hide_atoms 
hide_atoms ()

Hide atoms

  hide_midas_emulator 
hide_midas_emulator ()

Undisplay the Midas emulator

  hide_ribbon 
hide_ribbon ()

Hide molecule ribbons by undisplaying residues

  hide_volume 
hide_volume ()

Hide active volume viewer volume

  quit 
quit ()

Quit Chimera

  register_accelerators 
register_accelerators ()

Standard accelerators.

  remove_volume 
remove_volume ()

Remove active volume viewer volume

  round_ribbon 
round_ribbon ()

Show molecules with round ribbon representation

  show_accelerator_dialog 
show_accelerator_dialog ()

Show accelerator browser dialog

  show_all_markers 
show_all_markers ()

Show all volume markers from the active marker set

  show_blue_markers 
show_blue_markers ()

  show_chain_trace_only 
show_chain_trace_only ()

Show molecule chain trace only

  show_cyan_markers 
show_cyan_markers ()

  show_green_markers 
show_green_markers ()

  show_model_panel 
show_model_panel ()

Show the model panel dialog

  show_mouse_modes 
show_mouse_modes ()

Show mouse modes pane of preferences dialog

  show_open_file_dialog 
show_open_file_dialog ()

Show the main Chimera open file dialog

  show_open_volume_dialog 
show_open_volume_dialog ()

Show the volume viewer open file dialog

  show_phantom_dialog 
show_phantom_dialog ()

Show Phantom force feedback dialog for placing markers on volume data

  show_preferences_dialog 
show_preferences_dialog ()

Show Preferences dialog

  show_python_shell 
show_python_shell ()

Show Python shell (IDLE)

  show_red_markers 
show_red_markers ()

  show_reply_log 
show_reply_log ()

Show Reply log

  show_side_chains_only 
show_side_chains_only ()

Show molecule side chains/bases only

  show_side_view 
show_side_view ()

Show side view dialog

  show_users_guide 
show_users_guide ()

Show users guide in web browser

  show_volume 
show_volume ()

Show active volume viewer volume

  show_volume_dialog 
show_volume_dialog ()

Show volume viewer dialog

  show_volume_markers 
show_volume_markers ( rgb )

  show_volume_path_tracer_dialog 
show_volume_path_tracer_dialog ()

Show volume path tracer viewer dialog

  sphere_representation 
sphere_representation ()

Show molecules with sphere representation

  standard_orientation 
standard_orientation ()

Rotate active models to standard orientation. x horizontal, y vertical, z out of screen

  stick_representation 
stick_representation ()

Show molecules with stick representation

  toggle_blue_markers 
toggle_blue_markers ()

  toggle_cyan_markers 
toggle_cyan_markers ()

  toggle_green_markers 
toggle_green_markers ()

  toggle_red_markers 
toggle_red_markers ()

  toggle_status_line 
toggle_status_line ()

Show or unshow main window status line

  toggle_volume_markers 
toggle_volume_markers ( rgb )

  turn_off_accelerators 
turn_off_accelerators ()

Turn off accelerators

  view_all 
view_all ()

Adjust camera center and scale so all displayed models are in view.

  wire_representation 
wire_representation ()

Show molecules with wire representation


Table of Contents

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