Chimera tutorial
USCF Mission Bay Library
July 15, 9:00 - 11:00 AM
Molecular orbitals |
X-ray density map |
Electrostatic potential |
Water occupancy |
DOCK scoring grids |
Electron microscope single particle reconstructions |
Electron microscope tomography |
3-d light microscopy (wide-field, confocal, ...) |
1a0m.omap |
volume dialog |
high contour level, disulfides |
low contour level, data bounds |
Tyrosine residue in density. |
Measure and Color Blobs. |
Colored protein copies. |
Side view dialog |
Clipping density in front. |
Surface capping dialog. |
Covering holes in surface. |
Per-model clipping dialog. |
Slab clipping. |
Subregion selection panel. |
Green outline box. |
After pressing Crop. |
Atomic model (PDB file). |
Zone panel. |
Zone around chain A. |
Serine 4, chain A. |
Rotamers dialog. |
Second best orientation. |
Values at atom positions. |
Render by attribute dialog. |
Atoms colored by density. |
Color chooser. |
Microtubule map and tubulin dimer. |
Fit in map dialog. |
Fit tubulin including simulated map. |
Volume tracer dialog. |
Markers for tubulin monomers. |
Colored map. |
Color zone dialog. |
Human cytotoxic T-cell. |
Volume planes panel. |
Traced objects from IMOD. |
Masked vesicle. |