Commands for Making Animations

Examples of commands for making animations with UCSF Chimera.
The scripts require a Chimera build from March 2012 or later.
See also: movie content, movie script examples

Play animations by clicking on images or or all videos.

Motion

turn y 3 120 rock y 3 136 cycle 68 move x -0.2 50 model #1 scale 1.02 100
Rotate in 3 degree steps for 120 frames. Script. Details. Rock back and forth for 136 frames. Script. Details. Move 50 steps of 0.2 Angstroms. Script. Details. Zoom in by factor 1.02 for 100 frames. Script. Details.


reset p1 100 fly 30 p1 p2 p3 p4 p5 coordset #1 1,161 set independent
Restore a previously saved position. Script. Details. Smoothly fly through 5 positions. Script. Details. Play a molecular trajectory. Script. Details. Rotate models about their own centers. Script. Details.


rotation 1 2 180 vop morph #0,1 frames 200 play radial #1:.A-U,.X-Z 8 100 play wave #2 #3 100 100
Rotate about a bond Script. Details. Morph between density maps Script. Details. Radially move surfaces. Script. Details. Wave morph quaternary structure. Script. Details.


play wiggle #0 24-67,68-119,... 200 play zip #1:1-146.I #0:1-146.I
Wiggle molecule Script. Details. Interpolate from end to end. Script. Details.

Visibility

movie crossfade 50 surftransparency 0 #0 68 2dlabel change l1 visibility hide frames 50 transp 100 ligand frames 68
Fade between scenes. Script. Details. Fade in a surface Script. Details. Fade out a text label Script. Details. Fade out molecule Script. Details.
perframe "vol #0 level .1 level $1" range .1,.02 frames 100 perframe "rib :$1" range 2,339 perframe "hbond spec #2" frames 200
Change contour level. Script. Details. Backbone trace. Script. Details. Display changing hydrogen bonds. Script. Details.

Clipping and Slicing

clip hither -0.5 120 mclip #1 offset -20 slab true
reset p1 100
volume #0 planes y,45,90 perframe "sop transform #1 radius $1" range 250,100
Clip front face. Script. Details. Slab clipping. Script. Details. Flip through density map planes Script. Details. Icosahedral slices. Script. Details.