HappyDoc Generated Documentation Class: Volume_Path_Dialog

. / VolumePath / gui.py / Volume_Path_Dialog 

Methods   
  select_marker 
select_marker ( self,  marker )

Select new marker and deselect other markers.

  move_or_resize_marker 
move_or_resize_marker (
        self,
        pointer_x,
        pointer_y,
        shift,
        resize,
        )
  highest_marker_set_number 
highest_marker_set_number ( self )
  mark_first_maximum 
mark_first_maximum (
        self,
        slice,
        marker_set,
        minimum_spacing=None,
        )
  show_chosen_markers 
show_chosen_markers ( self,  show )
  save_marker_set_cb 
save_marker_set_cb ( self )
  open_marker_set 
open_marker_set ( self,  path )
  update_mouse_binding_cb 
update_mouse_binding_cb ( self )
  active_set 
active_set ( self )
  place_marker_continuous 
place_marker_continuous (
        self,
        x,
        y,
        )
  get_file_path 
get_file_path (
        self,
        mslist,
        ask_path,
        )
  remove_empty_marker_sets 
remove_empty_marker_sets ( self,  mset_name )
  mouse_mode_icon 
mouse_mode_icon ( self )
  all_current_links 
all_current_links ( self )
  close_session_cb 
close_session_cb (
        self,
        trigger,
        a1,
        a2,
        )
  show_panels 
show_panels ( self,  pnames )
  find_marker_set_by_name 
find_marker_set_by_name ( self,  name )
  selected_markers 
selected_markers ( self )
  unselect_all_markers 
unselect_all_markers ( self )
  mark_point 
mark_point (
        self,
        xyz,
        marker_set=None,
        minimum_spacing=None,
        )

Xyz position must be in Chimera world coordinates.

  all_current_markers 
all_current_markers ( self )
  add_marker 
add_marker (
        self,
        pointer_x,
        pointer_y,
        place_on_spot,
        place_on_plane,
        place_outside_data,
        minimum_spacing=None,
        )
  shown_panels 
shown_panels ( self )
  move_marker_3d 
move_marker_3d ( self,  xyz )

Used with 3D input devices.

  delete_marker_notes_cb 
delete_marker_notes_cb ( self )
  selected_links 
selected_links ( self )
  rename_active_marker_set 
rename_active_marker_set ( self,  name )
  ask_for_save_path 
ask_for_save_path (
        self,
        title,
        default_path,
        )
  save_selected_marker_sets_cb 
save_selected_marker_sets_cb ( self )
  Close 
Close ( self )
  new_marker_set 
new_marker_set ( self,  name )
  delete_links_cb 
delete_links_cb ( self )
  marker_set_closed_cb 
marker_set_closed_cb ( self,  mset )
  fillInUI 
fillInUI ( self,  parent )
  add_marker_3d 
add_marker_3d ( self,  xyz )

Used with 3D input devices.

The user interface option to turn on and off marker placement and motion apply are intended only to restrict mouse input. So they are not checked here.

  save_session_cb 
save_session_cb (
        self,
        trigger,
        x,
        file,
        )
  set_active_marker_set 
set_active_marker_set ( self,  marker_set )
  select_marker_3d 
select_marker_3d ( self,  xyz )
  map 
map ( self,  event )
  open_marker_set_cb 
open_marker_set_cb ( self )
  visible_data_above_threshold 
visible_data_above_threshold (
        self,
        data_region,
        xyz,
        )
  mouse_up_cb 
mouse_up_cb (
        self,
        viewer,
        event,
        )
  mark_data 
mark_data (
        self,
        xyz,
        marker_set,
        )

Place marker if data value is above detection threshold.

Xyz position must be in Chimera world coordinates.

  enter 
enter ( self )
  save_marker_set_as_cb 
save_marker_set_as_cb ( self )
  add_marker_at_screen_xy 
add_marker_at_screen_xy (
        self,
        pointer_x,
        pointer_y,
        minimum_spacing=None,
        )
  grab_marker_3d 
grab_marker_3d ( self,  xyz )
  data_region 
data_region ( self )
  volume_segment 
volume_segment (
        self,
        data_region,
        pointer_x,
        pointer_y,
        )
  remove_marker_sets 
remove_marker_sets ( self,  marker_sets )
  grab_marker 
grab_marker (
        self,
        pointer_x,
        pointer_y,
        )
  show_chosen_links 
show_chosen_links ( self,  show )
  drop_and_link_marker 
drop_and_link_marker (
        self,
        xyz,
        rgba,
        marker_radius,
        link_radius,
        marker_set,
        minimum_spacing=None,
        )

Xyz position must be in marker set coordinates.

  delete_markers_cb 
delete_markers_cb ( self )
  close_marker_set_cb 
close_marker_set_cb ( self )
  chosen_markers 
chosen_markers ( self )

If no markers selected return all markers of active marker set.

  mark_slice_midpoint 
mark_slice_midpoint (
        self,
        slice,
        marker_set=None,
        minimum_spacing=None,
        )
  new_marker_set_cb 
new_marker_set_cb ( self )
  consecutive_selection_cb 
consecutive_selection_cb ( self )

This code relies on markers being implemented as atoms.

  unmap 
unmap ( self,  event )
  show_default_panels_cb 
show_default_panels_cb ( self )
  open_file_dialog_cb 
open_file_dialog_cb (
        self,
        apply,
        dialog,
        )
  mark_clip_planes_midpoint 
mark_clip_planes_midpoint (
        self,
        pointer_x,
        pointer_y,
        marker_set=None,
        minimum_spacing=None,
        )
  message 
message ( self,  string )
  save_marker_sets 
save_marker_sets (
        self,
        mslist,
        path=None,
        ask_path=None,
        )

Save marker sets in one file.

  mouse_down_cb 
mouse_down_cb (
        self,
        viewer,
        event,
        )
  show_marker_notes 
show_marker_notes ( self,  show )
  ungrab_marker 
ungrab_marker ( self )
  add_marker_set 
add_marker_set (
        self,
        marker_set,
        remove_empty_duplicate_sets=None,
        )
  update_marker_set_listbox 
update_marker_set_listbox ( self )
  mouse_drag_cb 
mouse_drag_cb (
        self,
        viewer,
        event,
        )
  form_link_cb 
form_link_cb (
        self,
        trigger,
        user_data,
        selection,
        )

Link consecutively selected_markers.

  selected_marker_sets 
selected_marker_sets ( self )

If no list box line is selected, include the active marker set.

  transfer_markers_cb 
transfer_markers_cb ( self )

Transfer selected markers to current marker set.

  save_all_marker_sets_cb 
save_all_marker_sets_cb ( self )
  data_slice 
data_slice (
        self,
        pointer_x,
        pointer_y,
        )
  create_link 
create_link (
        self,
        m1,
        m2,
        rgba=None,
        radius=None,
        )
  chosen_links 
chosen_links ( self )

This document was automatically generated Wed Jul 9 15:49:17 2008 by HappyDoc version 3.1