HappyDoc Generated Documentation ./StructSeqAlign/align.py

. / StructSeqAlign / align.py 

Functions   
  multiAlign 
multiAlign (
        chains,
        cutoff,
        matchType,
        gapChar,
        circular,
        )
Exceptions   

AttributeError, "No such EndPoint attribute: %s" % attr
UserError("Cannot generate alignment with" " %s %s because it is not superimposed" " on the other structures" %( seq.molecule.name, seq.name ) )

  pairAlign 
pairAlign (
        chains,
        cutoff,
        gapChar,
        showAlignment=None,
        )
Exceptions   

UserError( "Cannot generate alignment because no" " residues within cutoff distance" )

  match2align 
match2align (
        chains,
        cutoff,
        matchType,
        gapChar,
        circular,
        )
  findPruneCrosslinks 
findPruneCrosslinks (
        allLinks,
        pairings,
        seq1,
        seq2,
        linkList,
        links1,
        links2,
        tag=None,
        )
Classes   

This document was automatically generated Wed Jul 9 15:49:20 2008 by HappyDoc version 3.1