HappyDoc Generated Documentation Class: PhyloNode

. / MultAlignViewer / parsePhylo.py / PhyloNode 

Methods   
  assignXdeltas 
assignXdeltas ( self )
  assignSeqIndices 
assignSeqIndices (
        self,
        seqs,
        assignments=None,
        )
Exceptions   

UserError( "Tree node '%s' matches multiple" " sequences" % self.label )
UserError( "No sequence name matches tree node" " name '%s'" % self.label )
UserError("Sequence '%s' matches multiple tree" " nodes: '%s' and '%s'" %( seqs [ assignment ].name, self.label, assignments [ assignment ].label ) )

  assignXpositions 
assignXpositions (
        self,
        branchStyle=None,
        curX=None,
        maxLength=None,
        )
Exceptions   

ValueError( "Unknown/unimplemented branch style: " + branchStyle )

  assignYpositions 
assignYpositions ( self )
  depth 
depth ( self )
  countNodes 
countNodes ( self,  nodeType=None )
  maxLength 
maxLength ( self )
  assignedIndices 
assignedIndices ( self )
  freshCopy 
freshCopy ( self )
  __init__ 
__init__ ( self )

This document was automatically generated Wed Jul 9 15:49:35 2008 by HappyDoc version 3.1