HappyDoc Generated Documentation Class: SeqCanvas

. / MultAlignViewer / SeqCanvas.py / SeqCanvas 

Methods   
  addHeaders 
addHeaders ( self,  headers )
  headerDisplayOrder 
headerDisplayOrder ( self )
  bboxList 
bboxList (
        self,
        line1,
        line2,
        pos1,
        pos2,
        coverGaps=None,
        )
  showHeaders 
showHeaders ( self,  headers )
  updateNumberings 
updateNumberings ( self )
  setRulerDisplay 
setRulerDisplay ( self,  showRuler )
  layout 
layout ( self )
  seeBlocks 
seeBlocks ( self,  blocks )
  setRightNumberingDisplay 
setRightNumberingDisplay ( self,  showNumbering )
  clustalConsensusChars 
clustalConsensusChars ( self,  offset )
  addSeqs 
addSeqs ( self,  seqs )
  realign 
realign (
        self,
        seqs,
        offset=None,
        )
  __init__ 
__init__ (
        self,
        parent,
        mav,
        seqs,
        )
  destroy 
destroy ( self )
  saveEPS 
saveEPS (
        self,
        fileName,
        colorMode,
        rotate,
        extent,
        hideNodes,
        )
  hideHeaders 
hideHeaders ( self,  headers )
  boundedBy 
boundedBy (
        self,
        x1,
        y1,
        x2,
        y2,
        )
  showNodes 
showNodes ( self,  show )
  assocSeq 
assocSeq ( self,  aseq )
  setColorFunc 
setColorFunc ( self,  coloring )
  setClustalParams 
setClustalParams (
        self,
        categories,
        colorings,
        )
  recolor 
recolor ( self,  seq )
  showTree 
showTree ( self,  show )
  deleteHeaders 
deleteHeaders ( self,  headers )
Exceptions   

ValueError( "Cannot delete builtin header" " sequence" )
ValueError( "Cannot delete an alignment sequence" )

  usePhyloTree 
usePhyloTree (
        self,
        tree,
        callback=None,
        )
  shouldWrap 
shouldWrap ( self )
  refresh 
refresh (
        self,
        seq,
        left=None,
        right=None,
        updateAttrs=None,
        )
  setLeftNumberingDisplay 
setLeftNumberingDisplay ( self,  showNumbering )
  lineWidthFromPrefs 
lineWidthFromPrefs ( self )
  activeNode 
activeNode ( self )

This document was automatically generated Wed Jul 9 15:49:35 2008 by HappyDoc version 3.1