HappyDoc Generated Documentation ./CASTp

. / CASTp 

Functions   
  processInfoFile 
processInfoFile (
        f,
        label,
        fields,
        )
Exceptions   

ValueError("%s info header missing or" " IDs not consecutive" % label.capitalize() )

  processPocketInfoFile 
processPocketInfoFile ( pi )
  processMouthInfoFile 
processMouthInfoFile ( mi )
  processCastpFiles 
processCastpFiles (
        pdb,
        mouthAtoms,
        mouthInfo,
        pocketAtoms,
        pocketInfo,
        identifyAs=None,
        )
Exceptions   

ValueError( "Multiple structures in CASTp PDB file?!?" )
ValueError("Number of mouths (%d) does not match number" " of pockets (%d)." %(len( mouthInfoDicts ), len( pocketInfoDicts ) ) )
ValueError( "No structures in CASTp PDB file?!?" )
IOError(pdbio.error() )

  gatherAtoms 
gatherAtoms (
        bySerial,
        label,
        f,
        dicts,
        )
Exceptions   

ValueError("Non-existent serial number (%d) found" " in %s file" %( serial, label ) )
ValueError("Atom with serial number %d (%s) does" " not match name in %s file (%s)" %(serial, chimeraLabel( atom, showModel = False, modelName = False ), label, fields [ 2 ] ) )
ValueError("%s ID (%d) in %s file greater than" " number of %ss (%d) in %s info file" %( label.capitalize(), id, label, label, len( dicts ), label ) )
ValueError("Atom with serial number %d (%s) does" " not match residue type in %s file (%s)" %(serial, chimeraLabel( atom, showModel = False, modelName = False ), label, fields [ 3 ] ) )

Classes   

CastpCavity

Python files   

ChimeraExtension.py

gui.py

prefs.py


This document was automatically generated Wed Jul 9 15:49:10 2008 by HappyDoc version 3.1