HappyDoc Generated Documentation ./BuildStructure

. / BuildStructure 

Functions   
  changeAtom 
changeAtom (
        atom,
        element,
        geometry,
        numBonds,
        autoClose=None,
        name=None,
        )
Exceptions   

ParamError( "Atom already has more bonds than requested.\n" "Either delete some bonds or choose a different number" " of requested bonds." )

  placeHelium 
placeHelium (
        resName,
        model=None,
        position=None,
        )
  placePeptide 
placePeptide (
        sequence,
        phi,
        psi,
        model=None,
        position=None,
        rotlib=None,
        chainID=None,
        )
Exceptions   

ValueError( "No sequence supplied" )
ValueError( "Sequence contains non-alphabetic characters" )
ValueError( "Unrecognized protein 1-letter code:" " %s" % c )

  setBondLength 
setBondLength (
        bond,
        bondLength,
        movingSide=None,
        status=None,
        )
  bondLength 
bondLength (
        e1,
        geom,
        e2,
        a2info=None,
        knownSingle=None,
        )
  placeFragment 
placeFragment (
        fragment,
        resName,
        model=None,
        position=None,
        )
Classes   

ParamError

Python files   

ChimeraExtension.py

Fragment.py

PubChem.py

Smiles.py

gui.py

Subdirectories   

SOAPpy

fragments


This document was automatically generated Wed Jul 9 15:49:05 2008 by HappyDoc version 3.1