HappyDoc Generated Documentation ./AddH

. / AddH 

Functions   
  findRotamerNearest 
findRotamerNearest (
        atPos,
        idatmType,
        atom,
        neighbor,
        checkDist,
        )
  guessTerminii 
guessTerminii ( mol )
  bondWithHLength 
bondWithHLength ( heavy,  idatmType )
  findNearest 
findNearest (
        pos,
        atom,
        exclude,
        checkDist,
        )
  terminiiFromSeqres 
terminiiFromSeqres ( mol,  sr )
Exceptions   

TerminiiError( "Can't get mol seqs" )
TerminiiError( "No SEQRES for chain %s" % chainID )
TerminiiError( "Sequence longer than SEQRES!" " (chain %s)" % chainID )

  hbondAddHydrogens 
hbondAddHydrogens (
        models,
        unknownsInfo=None,
        hisScheme=None,
        )
  newHydrogen 
newHydrogen (
        parentAtom,
        Hnum,
        totalHydrogens,
        namingSchema,
        pos,
        )
  completeTerminalCarboxylate 
completeTerminalCarboxylate ( cter )
  postAdd 
postAdd ( fakeN,  fakeC )
  determineNamingSchemas 
determineNamingSchemas ( molecule,  typeInfo )
  vdwRadius 
vdwRadius ( atom )
  simpleAddHydrogens 
simpleAddHydrogens (
        models,
        unknownsInfo=None,
        hisScheme=None,
        )
  roomiest 
roomiest (
        positions,
        attached,
        checkDist,
        )
  determineTerminii 
determineTerminii ( mols )
  gatherUnknowns 
gatherUnknowns ( models,  prevUnknowns=None )
  cmdAddH 
cmdAddH (
        molecules=None,
        hbond=None,
        useHisName=None,
        )
Classes   

TerminiiError

IdatmTypeInfo

Python files   

ChimeraExtension.py

gui.py

hbond.py

prefs.py

simple.py

unknownsGUI.py

Subdirectories   

helpdir


This document was automatically generated Wed Jul 9 15:49:18 2008 by HappyDoc version 3.1