HappyDoc Generated Documentation ./AddCharge

. / AddCharge 

Functions   
  estimateNetCharge 
estimateNetCharge ( atoms )
  addNonstandardResCharges 
addNonstandardResCharges (
        residues,
        netCharge,
        method=None,
        gaffType=None,
        status=None,
        )
  cmdAddNonstdCharge 
cmdAddNonstdCharge (
        residues,
        netCharge,
        method=None,
        gaffType=None,
        )
Exceptions   

MidasError("Residues not all the same type" " (%s != %s)" %( resName, r.type ) )
MidasError( "No such residues" )
MidasError(str( v ) )
MidasError("Residues have differing number of" " atoms (%d != %d)" %(numAtom, len( r.atoms ) ) )

  initiateAddCharges 
initiateAddCharges (
        models=None,
        method=None,
        gaffType=None,
        status=None,
        cb=None,
        nogui=None,
        amberNucleicPhosphorylation=None,
        )
  addStandardCharges 
addStandardCharges (
        models=None,
        status=None,
        phosphorylation=None,
        nogui=None,
        )
  cmdAddAllCharge 
cmdAddAllCharge (
        molecules=None,
        method=None,
        gaffType=None,
        )
Exceptions   

MidasError( "Atom specifier does not select any models" )

  cmdAddStdCharge 
cmdAddStdCharge ( molecules=None )
Classes   

FakeRes

FakeAtom

ChargeError

Python files   

ChimeraExtension.py

attr2dict.py

dict.py

gui.py

prefs.py


This document was automatically generated Wed Jul 9 15:49:04 2008 by HappyDoc version 3.1