|
|
add_symmetry_update_handler
|
add_symmetry_update_handler ( mol )
|
|
|
unique
|
unique ( s )
Eliminate identical objects from list.
|
|
|
model_argument
|
model_argument ( id_string )
|
Exceptions
|
|
|
MidasError, 'Multiple models with id: %s' % id_string
MidasError, 'No model with id: %s' % id_string
|
|
|
|
close_center_transforms
|
close_center_transforms (
mol,
mref,
tflist,
rdist,
)
|
|
|
update_symmetry_positions
|
update_symmetry_positions ( mol )
|
|
|
set_volume_icosahedral_symmetry
|
set_volume_icosahedral_symmetry ()
|
|
|
create_symmetry_copies
|
create_symmetry_copies (
mol,
mref,
tflist,
cdist,
rdist,
)
|
|
|
default_molecule
|
default_molecule ()
|
Exceptions
|
|
|
MidasError, 'No molecules are opened'
MidasError, 'Multiple molecules opened, must specify one'
|
|
|
|
undo_symmetry_copies_command
|
undo_symmetry_copies_command ( cmdname, args )
|
Exceptions
|
|
|
MidasError, 'Model %s does not have symmetry copies' % fields [ 0 ]
|
|
|
|
remove_symmetry_copies
|
remove_symmetry_copies ( mol )
|
Exceptions
|
|
|
MidasError, 'Model %s does not have symmetry copies' % mol.name
|
|
|
|
symmetry_xform
|
symmetry_xform (
mol_xform,
sym_xform,
ref_xform,
)
|
|
|
remove_symmetry_update_handler
|
remove_symmetry_update_handler ( mol )
|
|
|
motion_cb
|
motion_cb (
trigger_name,
mol,
trigger_data,
)
|
|
|
is_model_deleted
|
is_model_deleted ( m )
|
|
|
contacting_transforms
|
contacting_transforms (
mol,
mref,
tflist,
cdist,
)
|
|
|
symmetry_copies_command
|
symmetry_copies_command ( cmdname, args )
|
Exceptions
|
|
|
MidasError, msg
MidasError, 'No symmetric molecules in range'
MidasError, 'No opened volume or reference model specified'
MidasError, 'No molecule opened'
|
|
|
|
model_symmetries
|
model_symmetries ( mref, mol )
|
|
|
parse_float
|
parse_float (
key,
fields,
default=None,
)
|
Exceptions
|
|
|
MidasError, 'Missing %s value' % key
MidasError, 'Invalid %s value "%s"' %(key, fields [ f + 1 ] )
|
|
|
|
molecule_argument
|
molecule_argument ( id_string )
|
Exceptions
|
|
|
MidasError, 'Model %s is not a molecule' % id_string
|
|
|