focus ()

Set camera to show selected objects

open_session ()

Show the open session dialog

open_previous_file ( k )

Open a previous file in the file history list

turn_y_90 ()

activate_all ()

Make all models movable with mouse

show_surface_color_dialog ()

Show dialog for surface coloring using volume data

display_atoms ()

Display atoms

illustrate_alignment ()

Draw slabs to illustrate a the relative orientations of two domains

original_positions ()

Move all models to original positions on open. Like reset command.

wire_representation ()

Show molecules with wire representation

edged_ribbon ()

Show molecules with edged ribbon representation

names_of_last_opened ()

Show the names of the last 3 opened files on the status line

toggle_clipping_mouse_modes ()

Toggle per-model clipping mouse modes

show_users_guide ()

Show users guide in web browser

ball_and_stick_representation ()

Show molecules with ball and stick representation

export_scene ()

Export 3D scene for external rendering programs

select_all ()

Select all models

turn_x_90 ()

show_per_model_clipping_dialog ()

Show per-model clipping dialog

close_all_models ()

Close all models

hide_atoms ()

Hide atoms

active_marker_set ()

sphere_representation ()

Show molecules with sphere representation

open_last_2_files ()

Open the top 2 files in the file history list

align_backbones ()

Superimpose molecules by pairing selected atoms from identical residues

set_black_background ()

show_zone_dialog ()

activate_model ( model_number )

Toggle whether model can be moved with mouse

toggle_status_line ()

Show or unshow main window status line

turn_z_90 ()

show_volume_path_tracer_dialog ()

Show volume path tracer viewer dialog

show_model_panel ()

Show the model panel dialog

show_preferences_dialog ()

Show Preferences dialog

activate_toggle_and_remember ()

Toggle and remember active models

toggle_depth_cueing ()

Toggle depth cueing (ie dimming with depth)

quit ()

Quit Chimera

set_background ( rgb )

clear_selection ()

Clear selection

hide_ribbon ()

Hide molecule ribbons by undisplaying residues

select_connected ()

Select atoms and bonds connected to currently selected atoms and bnods

show_side_chains_only ()

Show molecule side chains/bases only

show_surface ()

Show MSMS molecular surface

activate_reverse ()

Make movable models unmovable and unmovable models movable

hide_all_markers ()

Hide all volume markers from the active marker set

activate_toggle ( models )

Toggle whether models can be moved with mouse

show_chain_trace_only ()

Show molecule chain trace only

invert_selection ()

Invert selection within selected models

stick_representation ()

Show molecules with stick representation

hide_surface ()

Hide MSMS molecular surface

show_accelerator_dialog ()

Show accelerator browser dialog

view_all ()

Adjust camera center and scale so all displayed models are in view.

select_zone ()

color_by_element ()

Color atoms by element

round_ribbon ()

Show molecules with round ribbon representation

open_last_file ()

Open the top file in the file history list

turn_off_accelerators ()

Turn off accelerators

main_window_focus ()

show_all_markers ()

Show all volume markers from the active marker set

delete_atoms ()

Delete atoms and bonds

save_image ()

Save image in a file

clip_and_cap_surface ()

Turn on per-model clipping and surface capping for the first surface model

activate_model_0 ()

Toggle whether model 0 can be moved with mouse

activate_model_1 ()

Toggle whether model 1 can be moved with mouse

activate_model_2 ()

Toggle whether model 2 can be moved with mouse

activate_model_3 ()

Toggle whether model 3 can be moved with mouse

show_phantom_dialog ()

Show Phantom force feedback dialog for placing markers on volume data

open_last_3_files ()

Open the top 3 files in the file history list

backbone_only ()

Display backbone only

show_reply_log ()

Show Reply log

close_session ()

Close the current session

open_2nd_to_last_file ()

Open the second file in the file history list

show_python_shell ()

Show Python shell (IDLE)

standard_orientation ()

Rotate active models to standard orientation. x horizontal, y vertical, z out of screen

set_center_of_rotation ()

Set center of rotation to center of selected atoms or use center of models mode if no atoms are selected

show_command_line ()

Show command line and turn off accelerators

save_session_as ()

Show the save session dialog

rainbow_chain ()

Color each chain with a different color

show_side_view ()

Show side view dialog

show_mouse_modes ()

Show mouse modes pane of preferences dialog

color_secondary_structure ()

Color secondary structure using ColorSS extension

open_3rd_to_last_file ()

Open the second file in the file history list

set_white_background ()

flat_ribbon ()

Show molecules with flat ribbon representation

invert_selection_all_models ()

Invert selection within space of all models

fetch_file ()

Show dialog for fetching PDB file by id

register_accelerators ()

Standard accelerators.

recent_opened_files ()

is_model_deleted ( m )

Test if model has been deleted

show_surface_capper_dialog ()

Show surface capping dialog

hide_command_line ()

Undisplay the command line

save_session ()

Save the session to the most recent session file

surface_selected_atoms ()

Show MSMS molecular surface enclosing just the selected atoms

remember_file ( path )

Put file at top of main open dialog file history.

open_file ()

Show the main Chimera open file dialog