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/ . / _chimera / SessionPDBio
SessionPDBio() -> SessionPDBio
constants:
- ALL_CONECT = 5
- ALL_FRAMES = 7
- ATOMS = 0
- COVALENT_BONDS = 1
- HEADERS = 4
- HYDROGEN_BONDS = 2
- NUM_FLAGS = 9
- SALT_BRIDGES = 3
- SECONDARY_STRUCTURE = 6
attributes:
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Methods
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writeMask
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writeMask ( self )
writeMask() -> list of bool
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standardResidue
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standardResidue ( self, type )
standardResidue(type: str) -> bool
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readPDBfile
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readPDBfile ( self, filename )
readPDBfile(filename: str) -> list of Molecule
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ok
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ok ( self )
ok() -> bool
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addHBond
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addHBond (
self,
a0,
a1,
)
addHBond(a0: Atom, a1: Atom)
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removeStandardResidue
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removeStandardResidue ( self, type )
removeStandardResidue(type: str)
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addStandardResidue
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addStandardResidue ( self, type )
addStandardResidue(type: str)
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readMask
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readMask ( self )
readMask() -> list of bool
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readSessionPDBfile
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readSessionPDBfile ( self, filename )
readSessionPDBfile(filename: str) -> list of Molecule, dict of (int, Atom)
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error
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error ( self )
error() -> str
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setBondLengthTolerance
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setBondLengthTolerance ( self, t )
setBondLengthTolerance(t: float)
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writePDBfile
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writePDBfile (
self,
mols,
filename,
)
writePDBfile(mols: sequence of Molecule, filename: str)
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whatToDo
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whatToDo ( self )
whatToDo() -> list of bool
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bondLengthTolerance
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bondLengthTolerance ( self )
bondLengthTolerance() -> float
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