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/ . / DBPuppet / std_webdata.py / std_webdata
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Methods
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open_in_chimera
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open_in_chimera (
self,
web_files,
pdb_ids,
all_cmds,
)
web_files is a list of files that were dloaded from web, pdb_ids is
a list of pdb ids, mid_cmds is a list of midas commands
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Exceptions
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chimera.UserError("Error while opening model with PDB id '%s': %s" %( p, what ) )
chimera.ChimeraSystemExit, v
SystemExit
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warnIfNeeded
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warnIfNeeded (
self,
web_files,
all_cmds,
)
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warnUser
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warnUser ( self, warn_text )
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cleanUpDloaded
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cleanUpDloaded ( self, dload )
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handle_file
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handle_file ( self, file_loc )
this function is called from DBPuppet::__init__.py.
file_loc is either an open file handle, or a string specifying
the location of the file.
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Exceptions
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chimera.UserError, "Couldn't find url '%s': %s" %( url, what )
chimera.UserError, "Invalid credentials to access url '%s'" % url
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parse_file_sax
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parse_file_sax ( self, infile )
expects an open file as infile
this function takes care of closing the handle
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__init__
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__init__ ( self )
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