unselected_chain_atoms ( ca_sel )

select_nearby ( distance,  load_atoms )

Select atoms and chains near the currently selected atoms and chains.

atomic_contacts (
        asets1,
        asets2,
        distance,
        load_atoms,
        )

Find atomic contacts between two sets of multiscale chains. Return contact atoms, optionally loading atoms if needed.

chain_atom_subset ( ca )

Make Atom_Set for subset of atoms from multiscale chain.

molecule_atom_set ( ma )

Make Atom_Set for subset of atoms not in a multiscale chain.

chain_atom_sets ( cplist )

Get chain coordinates and transforms. Chains that differ only by a transform use the same Numeric array of coordinates.

sublist ( list,  indices )

select_contacts ( distance,  load_atoms )

Select contacts between selected and unselected atoms and chains

select_atoms_and_chains ( atoms,  cplist )

all_atoms_and_chains ( asets,  load_atoms )

unselected_molecule_atoms ( ma_sel )

atoms_and_chains (
        asets,
        ilists,
        load_atoms,
        )

selected_and_unselected_atom_sets ()

subtract_lists ( list1,  list2 )

non_multiscale_molecules ()

xform_numeric_array ( xf )

group_selected_atoms ()

selected_and_unselected_chains ()

chain_transform ( cp )

Atom_Set