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Display the results from a Minrms structure alignment run.
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Base Classes
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ModelessDialog
Collaboratory.API.CollabExtension
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Methods
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__init__
collabRecvModify
fillInUI
openPDB
readAlignments
readRMSD
setCurrentAlignment
setup
showCurrentAlignment
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__init__
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__init__ (
self,
extensionName,
filename=None,
collabData=None,
)
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collabRecvModify
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collabRecvModify ( self, data )
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fillInUI
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fillInUI ( self, parent )
Create the extension user interface.
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openPDB
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openPDB ( self, pdbFile )
Open a PDB file as a Chimera model.
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readAlignments
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readAlignments ( self )
Read all MSF alignments referenced by costs data.
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Exceptions
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IOError, "%s: %s" %(path, str( s ) )
IOError, "%s: cannot open: %s" %( path, s )
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readRMSD
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readRMSD ( self )
Read the Minrms costs file and save data columns as lists.
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Exceptions
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IOError, "%s: cannot open: %s" %( path, s )
IOError, "%s: file is empty" % path
IOError, "%s: not an RMSD file" % path
IOError, "%s: wrong number of columns" % path
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setCurrentAlignment
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setCurrentAlignment ( self, n )
Set the current alignment in RMSD plot to alignment n.
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setup
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setup ( self, filename )
Open file and follow filename references to all Minrms data.
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Exceptions
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IOError, "%s: cannot open: %s" %( filename, s )
IOError, "%s: incomplete info file" % filename
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showCurrentAlignment
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showCurrentAlignment ( self, n )
Update just the MinrmsPlot user interface
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