|
Viewer handles associating an MSF sequence with a
PDB file. This functionality is separated from the main
viewer to provide a convenient mechanism for supporting
multiple association methods (e.g., one for Chimera and
another for Midas)
Available data members include (but not limited to):
msf - MSF instance
msf.sequenceList - list of sequences
|
Methods
|
|
|
|
|
|
__init__
|
__init__ (
self,
*args,
*kw,
)
|
|
|
associate
|
associate (
self,
n,
mol,
)
|
|
|
colorSS
|
colorSS (
self,
helixColor,
sheetColor,
turnColor,
borderColor,
)
|
|
|
editDelete
|
editDelete ( self )
Catch editing functions so we can update our mapping list
|
|
|
editInsert
|
editInsert ( self, char )
|
|
|
emHide
|
emHide ( self )
|
|
|
emName
|
emName ( self )
|
|
|
emQuit
|
emQuit ( self )
|
|
|
emRaise
|
emRaise ( self )
|
|
|
fileClose
|
fileClose ( self )
|
|
|
makeNameMenu
|
makeNameMenu ( self )
For chimera, we add a couple options for setting
base and highlight colors
|
|
|
pdbDisassociate
|
pdbDisassociate ( self, n )
|
|
|
pdbFile
|
pdbFile ( self, n )
|
|
|
pdbNewAssociate
|
pdbNewAssociate ( self, n )
|
|
|
pdbOldAssociate
|
pdbOldAssociate ( self, n )
|
Exceptions
|
|
IOError, 'Cannot handle more than ' 'one model per PDB file'
IOError, 'No model selected'
|
|
|
|
pdbResidue
|
pdbResidue (
self,
n,
r,
)
|
|
|
regionCB
|
regionCB (
self,
region,
reason,
*args,
)
Catch Region callback so we can highlight the appropriate residues
|
|
|
styleSS
|
styleSS ( self )
callback to color by secondary structure
|
|