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Methods
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__init__
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__init__ (
self,
msf,
master=None,
seqCount=10,
nameWidth=10,
seqWidth=80,
**kw,
)
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calcSim
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calcSim ( self, percent )
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calcSimRes
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calcSimRes (
self,
residues,
percent,
)
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colorSchemeCB
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colorSchemeCB (
self,
scheme,
reason,
*args,
)
Callback for ColorScheme
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editDelete
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editDelete ( self )
Sequence editing functions
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editInsert
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editInsert ( self, char )
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fileClose
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fileClose ( self )
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fileInspect
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fileInspect ( self )
File menu callback routines
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filePrint
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filePrint ( self )
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fileSave
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fileSave ( self )
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findEditedRegion
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findEditedRegion (
self,
width,
area,
regionList,
)
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fontCB
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fontCB (
self,
chooser,
reason,
*args,
)
Callback for FontChooser
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inpectorInfo
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inpectorInfo (
self,
inspector,
request,
*args,
)
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inspectorCB
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inspectorCB (
self,
inspector,
reason,
*args,
)
Callback and information for Inspector
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makeNameMenu
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makeNameMenu ( self )
Create menu for individual sequence options
Override to add more entries
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newpdb
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newpdb ( self )
Sequence pop-up menu callback routines
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oldpdb
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oldpdb ( self )
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patternCB
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patternCB (
self,
pattern,
reason,
*args,
)
Callback for PatternBrowser
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patternInfo
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patternInfo (
self,
pattern,
request,
*args,
)
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pdbDisassociate
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pdbDisassociate ( self, n )
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pdbFile
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pdbFile ( self, n )
Return file name associated with sequence n
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pdbNewAssociate
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pdbNewAssociate ( self, n )
Routines for (dis)associating PDB file with sequence
Override for specific modeling package
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pdbOldAssociate
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pdbOldAssociate ( self, n )
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pdbResidue
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pdbResidue (
self,
n,
r,
)
Return name associated with residue r of sequence n
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prepareNameMenu
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prepareNameMenu ( self, n )
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progressEnd
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progressEnd ( self )
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progressInit
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progressInit ( self )
Progress message display routines
Override to provide alternative display
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progressShow
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progressShow ( self, msg )
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Exceptions
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ViewerAbort, 'cancelled at user request'
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regionCB
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regionCB (
self,
region,
reason,
*args,
)
Callback for RegionBrowser
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setFont
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setFont ( self )
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setSimColour
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setSimColour ( self, fract=0.8 )
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simColour
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simColour ( self, simMatrix )
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startSimDialog
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startSimDialog ( self )
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styleBackgroundChange
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styleBackgroundChange ( self )
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styleColorsChoose
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styleColorsChoose ( self, color )
Tries to load the color map indicated by color
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styleColorsEdit
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styleColorsEdit ( self )
Style menu callback routines
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styleColorsLoad
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styleColorsLoad ( self )
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styleColorsSave
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styleColorsSave ( self )
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styleFontChange
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styleFontChange ( self )
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unpdb
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unpdb ( self )
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xview
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xview ( self, *args )
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yview
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yview ( self, *args )
Synchronize vertical scrolling of canvases
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