# PDB 5ego (HOXB13-MEIS1 heterodimer bound to methylated DNA) # protein shown as ribbons, DNA shown as molecular surface; braced for 3D print # with pseudobonds, some defined manually, more added with the struts command open 5ego hide atoms show @ca show nucleic cartoon protein car style sides 24 ~cartoon nucleic color /a 90,90,30 color /b salmon surf nucleic enclose nucleic probe 1.1 color nucleic light sea green # open pbond file: protein-nucleic pseudobonds based on H-bonds, but edited to # go to CA instead of sidechain atoms and pruned to 1 pbond per residue pair open 5ego.pb style dashes 0 color pbonds blue # supplement with calculated struts struts @ca,p color silver light gentle set bg white windowsize 800 600